PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_4EE7DFCCD.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 335aa    MW: 35507 Da    PI: 5.9627
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_4EE7DFCCD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-181562148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd+llvd++++ G g+W+ +++  g++R++k+c++rw +yl
  Traes_4DL_4EE7DFCCD.1 15 KGPWTPEEDKLLVDYIQEKGHGSWRHVPKLAGLNRCGKSCRLRWTNYL 62
                           79********************************************97 PP

2Myb_DNA-binding574.5e-1868113148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rgr+T +E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Traes_4DL_4EE7DFCCD.1  68 RGRFTDDEEKLIIHLHSLLGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113
                            89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.831062IPR017930Myb domain
SuperFamilySSF466899.35E-3112109IPR009057Homeodomain-like
SMARTSM007173.0E-151464IPR001005SANT/Myb domain
PfamPF002491.6E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231669IPR009057Homeodomain-like
CDDcd001674.13E-121762No hitNo description
PROSITE profilePS5129427.69263117IPR017930Myb domain
SMARTSM007171.4E-1667115IPR001005SANT/Myb domain
PfamPF002492.2E-1668113IPR001005SANT/Myb domain
CDDcd001678.29E-1370113No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRSPCCDGE AGVKKGPWTP EEDKLLVDYI QEKGHGSWRH VPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGR FTDDEEKLII HLHSLLGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLGM  120
GTDPVTHRPR TDLSLLAGLP GLLAAAGNFG GAGSATGAWD MNALRLQADA AKFQLLQGLV  180
RALTAAAVPA PAPGMDKLMA LLAASNGGQN GAGIDQSMLL QQCQWDGMNN LPALTSSTPV  240
NGMDNVSGMF DGFGAGDGLS STEFGGYGGE SGSNVTVDAV APARPMVAND QECNNNGGGG  300
VSCDQTPASS PFNGLESLNL MDDLNTDGSW KDLLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-30151174105MYB PROTO-ONCOGENE PROTEIN
1msf_C7e-30151174105C-Myb DNA-Binding Domain
1mse_C7e-30151174105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276651e-132KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964317.11e-140PREDICTED: transcription factor MYB39-like
SwissprotQ8GWP03e-80MYB39_ARATH; Transcription factor MYB39
TrEMBLW5EHE90.0W5EHE9_WHEAT; Uncharacterized protein
STRINGSi006790m1e-140(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-77myb domain protein 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]